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Program blastn tblastn tblastx Database Fosmid_Ends apra1_fosmid_ends asdi1_fosmid_ends aur1_fosmid_ends bol1_fosmid_ends bot1_fosmid_ends chat1_fosmid_ends chhi_fosmid_ends chlo1_fosmid_ends cho1_fosmid_ends des1_fosmid_ends dicty1_fosmid_ends disp1_fosmid_ends heak293_fosmid_ends heak452_fosmid_ends het1_fosmid_ends masp1_fosmid_ends nan1_fosmid_ends ner1_fosmid_ends ocr1_fosmid_ends peca1_fosmid_ends phae1_fosmid_ends pin1_fosmid_ends pleu1_fosmid_ends rhiz1_fosmid_ends scis1_fosmid_ends sygr1_fosmid_ends syn1_fosmid_ends tefu1_fosmid_ends tevo1_fosmid_ends tri1_fosmid_ends
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
